Gō Contact Map

Gō Contact Map

Globular Proteins

Please cite:

[1] Nanomechanical Stability of Aβ Tetramers and Fibril-like Structures: Molecular Dynamics Simulations.

A. B. Poma, T.T.M Thu, et al..

J. Phys. Chem. B (2021): 125, 7628-7636.
https://doi.org/10.1021/acs.jpcb.1c02322

[2] Martini 3 Model of Cellulose Microfibrils: On the Route to Capture Large Conformational Changes of Polysaccharides.

R.A. Moreira, S.A.L. Weber, A. B. Poma.

Molecules (2022): 27, 976.
https://doi.org/10.3390/molecules27030976

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Gō parameters


It will be select contacts such that |residue index 1 - residue index 2| >= sequence distance


It will be select contacts such that dCA < cutoff long


It will be select contacts such that dCA > cutoff short