Cofas-Vargas L.F, Olivos-Ramirez G.E., Chwastyk M., Moreira R.A., Baker J.L., Marrink S.J. Poma A.B.† Nanomechanical footprint of SARS-CoV-2 variants in complex with a potent nanobody by molecular simulations, Nanoscale 16, 18824-18834 (2024).

Ray A., Thu T.M.T., Natividade R.d.S., Moreira R.A., Simpson J.D., Mohammed D., Koehler M. et al. Single-Molecule Investigation of the Binding Interface Stability of SARS-CoV-2 Variants with ACE2, ACS Nanosciences Au 4 (2), 136-145 (2024).

Cofas-Vargas L.F, Moreira R. A., Poblete S., Chwastyk M., Poma A.B.† The GōMartini approach: Revisiting the concept of contact maps and the modelling of protein complexes, Acta Phys. Pol. A. 145 (3), S9 (2024).

Poblete S., Pantano S., Okazaki K-i., Liang Z., Kremer K. Poma A.B.† Editorial: Recent advances in computational modelling of biomolecular complexes, Front. Chem. 11,1200409 (2023).

Liu S., Moreira R.A., Dujmović A., Liu H., Yang B., Poma A.B., Nash M.A.† Mapping Mechanostable Pulling Geometries of a Therapeutic Anticalin/CTLA-4 Protein Complex, Nano Letters 22(1), 179-187 (2022).

Moreira, R.A., Weber S.A.L., Poma A.B.† Martini 3 Model of Cellulose Microfibrils: On the Route to Capture Large Conformational Changes of Polysaccharides, Molecules 27(3), 976 (2022).

Tran Thi Minh Thu, Moreira, R. A., Weber A. L. S., Poma A. B.† "Molecular Insight into the Self-Assembly Process of Cellulose Iβ Microfibril, Int. J. Mol. Sci. 23, 8505 (2022).

Koelher M., Ray A.,Moreira R.A., Juniku B., Poma A.B.,† Alsteens D.† Molecular insights into receptor binding energetics and neutralization of SARS-CoV-2 variants, Nat. Commun. 12, 6977 (2021).

Mahmmod M., Poma A.B., Okazaki K.† Optimizing Gō-MARTINI coarse-grained model for F-BAR protein on lipid membrane, Front. Mol. Biosci. 8:619381 (2021).

Poma A.B.†, Tran Thi Minh Thu, Lam Tang Minh Tri, Hoang Linh Nguyen, Li M.S.† Nanomechanical Stability of Aβ Tetramers and Fibril-like Structures: Molecular Dynamics Simulations, J. Phys. Chem. B 125(28), 7628-7637 (2021).

Boopathi S., Poma A.B., Juarez R.G.† An Overview of Several Inhibitors for Alzheimer’s Disease: Characterization and Failure, Int. J. Mol. Sci. 22, 10798 (2021).

Moreira R.A.,† Chwastyk M, Baker J.L., Guzman H.V., Poma A.B..† Quantitative determination of mechanical stability in the novel coronavirus spike protein, Nanoscale 12(31):16409-16413 (2020).

Boopathi S.†, Poma A.B.,† Kolandaivel P.† Novel 2019 coronavirus structure, mechanism of action, antiviral drug promises and rule out against its treatment, J. Biomol. Struct. Dyn. 1-12 (2020).

Martinez M, Cooper C.D.†, Poma A.B.†, Guzman H.V.† Free energies of the disassembly of viral capsids from a multiscale molecular simulation approach, J. Chem. Inf. Model. 60(2):974–981 (2020).

Moreira R.A., Guzman HV, Boopathi S., Baker J.L., Poma A.B.† Characterization of Structural and Energetic Differences Between Conformations of the SARS-CoV-2 Spike Protein, Materials 13(5362):1-14 (2020).

Senapati S., Poma A.B., Cieplak M., Filipek S., Park P S-H.† Differentiating between inactive and active states of rhodopsin by atomic force microscopy in native membranes, Anal. Chem. 91(11):7226–7235 (2019).